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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11160055_11160398_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11160055 - 11160398
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAATTCAC
5'SS Class:
major
3'SS Sequence:
TGGTTTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGCTTCTGACTC
Flanking Amino Acid:
RVVTLAQHISEVITQDYTRH
Intron Amino Acid Position:
1953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.2
58.1
41
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
77.8
0.62
0.9
70.2
41.3
Minor 5ss
36.6
-1.5
3
45.5
42.5
Minor BPS
49
-0
1.7
59.08
40.5

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234