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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11160593_11161970_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11160593 - 11161970
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GTTGCAATAAAG
Flanking Amino Acid:
RISPQNEGGKRSPEQSKASA
Intron Amino Acid Position:
2017

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
80.2
30.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
71.8
0.49
0.9
62.7
38.1
Minor 5ss
42
-0.9
3
55.3
48.9
Minor BPS
45.5
-0.4
2.1
56.06
44.3

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234