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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11162121_11162836_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11162121 - 11162836
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCACAG
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGGCCTTGCAGA
Flanking Amino Acid:
LYREGEQMDQRMGSKSPGNN
Intron Amino Acid Position:
2067

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.2
53.6
45.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
35.8
-1.6
3.3
47.5
47.9
Minor BPS
41.4
-0.6
2
50.03
41.2

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234