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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11162983_11164196_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11162983 - 11164196
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGACA
5'SS Class:
major
3'SS Sequence:
TGTTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GCGTACTGAAGA
Flanking Amino Acid:
STTNKNETEYNVGQPGTEIF
Intron Amino Acid Position:
2116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
66.4
39
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
88.6
0.87
0.7
81.3
36.4
Minor 5ss
34.7
-1.7
3.2
46.7
42.5
Minor BPS
46.4
-0.2
1.9
53.89
44.2

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234