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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1118711_1120162_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1118711 - 1120162
Intron Length:
1452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GATGTCTTATTT
Flanking Amino Acid:
FTNEVKEKVKRAPGIHLLQE
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.4
0.73
0.8
74.9
39.5
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
54.3
0.21
1.7
69.16
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011924
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012435
1085082 - 1123678
38597