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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1120284_1123474_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1120284 - 1123474
Intron Length:
3191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
ACCACTTCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAA
U12 Branch Point Sequence:
ACCACTTCATCA
Flanking Amino Acid:
SEGMSAAILENTFLCSHVFS
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
65.3
0.34
1
62.8
37.6
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
45
-0.3
1.8
50.23
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011924
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012435
1085082 - 1123678
38597