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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11218112_11231948_F

Intron Information:

Intron Rank:
150292
Intron Class:
major
Intron Phase:
Intron Coordinates:
11218112 - 11231948
Intron Length:
13837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TGTCCATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
81.4
0.71
0.9
75.8
38.1
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
62.3
0.25
1.7
67.31
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030776
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038195
11217991 - 11264729
46739
ENSAPLT00000034546
11217902 - 11239048
21147