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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11229198_11231948_F

Intron Information:

Intron Rank:
150290
Intron Class:
major
Intron Phase:
Intron Coordinates:
11229198 - 11231948
Intron Length:
2751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
TGTTTGTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TGTCCATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
81.4
0.71
0.9
75.8
38.1
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
62.3
0.25
1.7
67.31
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030776
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025548
11228748 - 11237981
9234