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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11232112_11237858_F

Intron Information:

Intron Rank:
150291
Intron Class:
major
Intron Phase:
Intron Coordinates:
11232112 - 11237858
Intron Length:
5747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TATGCAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GGTTCTAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.8
43.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
72.5
0.51
1
67.7
42.3
Minor 5ss
30.1
-2.3
2.9
33
41.8
Minor BPS
52.8
0.17
2
74.47
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030776
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034546
11217902 - 11239048
21147
ENSAPLT00000025548
11228748 - 11237981
9234