About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11238371_11238774_F

Intron Information:

Intron Rank:
150294
Intron Class:
major
Intron Phase:
Intron Coordinates:
11238371 - 11238774
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTTGTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
87.8
0.85
0.7
83.5
31.6
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
58.6
0.26
1.8
73.92
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030776
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034546
11217902 - 11239048
21147