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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11303798_11318064_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11303798 - 11318064
Intron Length:
14267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TGTTTACTGACA
Flanking Amino Acid:
MLSLVWERLHARMATS
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
74.2
0.54
1
69.7
40.7
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
49.8
-0
1.9
69.03
36.5

Associated Gene:

Gene:
CCDC92
Ensembl Gene ID:
ENSAPLG00000014106
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014686
11303779 - 11320712
16934