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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11318633_11319936_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11318633 - 11319936
Intron Length:
1304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TAGTCATTAACT
Flanking Amino Acid:
ELTVKTSDLSENGSSRSDEL
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
76.8
0.67
1
66
40.9
Major PPT
77.3
0.61
0.8
69.2
37
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
74.8
0.86
1.6
86.8
38.4

Associated Gene:

Gene:
CCDC92
Ensembl Gene ID:
ENSAPLG00000014106
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037354
11318004 - 11323968
5965
ENSAPLT00000014686
11303779 - 11320712
16934