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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11323287_11323548_R

Intron Information:

Intron Rank:
73
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11323287 - 11323548
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
CACACTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
TTTTCTTCCACA
Flanking Amino Acid:
PIEAHRLKLQNTLRTPVYTT
Intron Amino Acid Position:
4332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
67.6
0.4
0.9
58
38
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
61.7
0.36
2
79.34
37.2

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294