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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11325352_11325437_R

Intron Information:

Intron Rank:
70
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11325352 - 11325437
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACGTAAG
5'SS Class:
major
3'SS Sequence:
ACTGTCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
AGGACTCTCACT
Flanking Amino Acid:
MAKSLAELQRALSGEVGMSS
Intron Amino Acid Position:
4167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
69
43.5
Major BPS
72.7
0.56
1
75
30.1
Major PPT
79
0.65
0.9
69.5
41.1
Minor 5ss
33.6
-1.9
2.9
33.3
41.9
Minor BPS
44.5
-0.3
2
60.5
42.9

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294