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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11326287_11326783_R

Intron Information:

Intron Rank:
68
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11326287 - 11326783
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATGAAAC
Flanking Amino Acid:
PRGTVKDDFVEAIESLPLAN
Intron Amino Acid Position:
4052

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
79.7
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.8
81.8
34.6
Minor 5ss
41.2
-1
2.9
54.5
43.9
Minor BPS
51.5
0.03
1.8
67.19
37.3

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294