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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11326956_11327625_R

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11326956 - 11327625
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTATTATTATTT
Flanking Amino Acid:
WSSLKYLIGEVMYGGRAIDS
Intron Amino Acid Position:
3995

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.6
0.71
0.8
74.5
40.1
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
50.8
0.1
1.8
70.46
40.5

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294