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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11327722_11328122_R

Intron Information:

Intron Rank:
66
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11327722 - 11328122
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
AAAACTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGAATCTTATCT
Flanking Amino Acid:
PYDFNESDFQVCMEILNTYL
Intron Amino Acid Position:
3963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
66.9
0.38
1
63.1
42.9
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
59.4
0.37
1.7
74.28
42

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294