About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11328333_11329529_R

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11328333 - 11329529
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
ATTATTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
AATTCAGTAATT
Flanking Amino Acid:
PIGILQKSLKVVTEPPNGLK
Intron Amino Acid Position:
3893

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
77.7
0.62
0.8
73
36.7
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
53.3
0.18
2.2
76.94
39.5

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294