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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11330538_11330772_R

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11330538 - 11330772
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTTAT
U12 Branch Point Sequence:
CTTTTCCTACCA
Flanking Amino Acid:
TNYVTLTMSEKYVQPPVISF
Intron Amino Acid Position:
3764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77
33.6
Major BPS
67.4
0.43
1.1
57.4
41.4
Major PPT
80.9
0.7
0.8
74.6
35
Minor 5ss
35.2
-1.7
2.9
41.4
39.1
Minor BPS
54.2
0.13
2
71.21
41.3

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294