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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11330928_11331651_R

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11330928 - 11331651
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACGTGCT
5'SS Class:
major
3'SS Sequence:
CTTTTCTTGCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGTCTCCTACCT
Flanking Amino Acid:
VEKNPDVWKNWYDTDALEQM
Intron Amino Acid Position:
3713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.1
72
37.8
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
81.9
0.72
0.9
76.7
37.4
Minor 5ss
36.7
-1.5
3.5
54.4
43
Minor BPS
50.4
0.09
2
74.74
41.6

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294