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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11331807_11332322_R

Intron Information:

Intron Rank:
61
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11331807 - 11332322
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATGA
5'SS Class:
major
3'SS Sequence:
TGAATGTGACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GGTTTCTGAATG
Flanking Amino Acid:
PQEELDFFLKGNISLEKSTR
Intron Amino Acid Position:
3661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
68.7
39.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
51.5
0.03
1.1
44.2
46.3
Minor 5ss
42.8
-0.8
2.9
56.9
47.1
Minor BPS
59.7
0.17
1.5
61.63
40.2

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294