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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11332428_11332833_R

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11332428 - 11332833
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTGAAAA
Flanking Amino Acid:
TLNTYNYGCTGLFEKHKLLF
Intron Amino Acid Position:
3626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.1
76.2
32.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.3
0.64
0.9
74.9
33.7
Minor 5ss
29.3
-2.4
2.9
33.7
41.5
Minor BPS
60.1
0.31
1.5
70.43
35.1

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294