About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11333108_11334154_R

Intron Information:

Intron Rank:
59
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11333108 - 11334154
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAACT
5'SS Class:
major
3'SS Sequence:
TATGTATGGCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TTGTGCATAATA
Flanking Amino Acid:
LEETKCKATEVIEKLDLAAT
Intron Amino Acid Position:
3535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.2
69.2
41.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
57.6
0.17
1.1
51.6
46.9
Minor 5ss
40.6
-1.1
3.2
59.4
44.7
Minor BPS
55.9
0.18
2
71.99
40.5

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294