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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11334385_11334769_R

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11334385 - 11334769
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTATCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
AAACAAAAAACT
Flanking Amino Acid:
FGKAMVINYTVTLKGLEDQL
Intron Amino Acid Position:
3458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
76.2
0.59
0.8
70.7
35
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
38.3
-0.8
2
54.06
39.9

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294