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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11335050_11335564_R

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11335050 - 11335564
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAGATA
5'SS Class:
major
3'SS Sequence:
TATTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTCCCATTATTC
Flanking Amino Acid:
KKKEEKNNLRMASFNDPDFL
Intron Amino Acid Position:
3365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
72
39.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
86.8
0.83
0.7
81.4
30.1
Minor 5ss
34.8
-1.7
3.3
39.7
46.1
Minor BPS
50.7
0
1.9
64.92
40.8

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294