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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11335713_11336353_R

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11335713 - 11336353
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCA
5'SS Class:
strong_major
3'SS Sequence:
ATTGCCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAGTCTTTGATC
Flanking Amino Acid:
SLLTNEVEVSRWVSQGLPPD
Intron Amino Acid Position:
3315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
73.3
37.4
Major BPS
100
1.24
0.5
100
0
Major PPT
75.1
0.57
0.9
66
40.2
Minor 5ss
40.6
-1.1
2.7
51
45.4
Minor BPS
68.3
0.56
1.2
69.8
36.3

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294