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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11338239_11339003_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11338239 - 11339003
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCCATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
CTTTCAATATTT
Flanking Amino Acid:
ISYSQVKSIRALLKNLNTTA
Intron Amino Acid Position:
3123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
73.4
0.53
0.9
71.3
34.8
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
48.5
-0
2.1
74
43

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294