About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11339186_11340030_R

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11339186 - 11340030
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTCAT
5'SS Class:
strong_major
3'SS Sequence:
ACCTGTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
ATCTCTTTCACC
Flanking Amino Acid:
KLDKSDVTEIRSFAKPPKQV
Intron Amino Acid Position:
3062

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
75.9
35
Major BPS
77.7
0.69
1
81
30.2
Major PPT
73.7
0.53
0.9
65.3
40.6
Minor 5ss
30.5
-2.2
2.9
41
45.3
Minor BPS
63.9
0.42
1.7
72.1
39.6

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294