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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11340206_11340739_R

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11340206 - 11340739
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTACAATTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GCTTTTACAATT
Flanking Amino Acid:
LKEISANTEVAEEKKKLAEE
Intron Amino Acid Position:
3004

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
68.1
0.41
0.9
61.9
38.4
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
47.7
-0
1.7
65.06
40.1

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294