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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11342256_11343046_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11342256 - 11343046
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAATT
5'SS Class:
major
3'SS Sequence:
CTTTTATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATGCTTTTATT
Flanking Amino Acid:
NLRMWCRNFPGLVNNTGIDW
Intron Amino Acid Position:
2859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
79.1
34.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.1
0.66
1
83.5
30.7
Minor 5ss
45.6
-0.5
2.9
66.8
44.1
Minor BPS
59.4
0.38
1.7
76.34
41.1

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294