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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11343251_11344172_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11343251 - 11344172
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACACAG
5'SS Class:
major
3'SS Sequence:
CCTTATGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTGTCCTTATGT
Flanking Amino Acid:
LELINNMLTSGMVPALFPDD
Intron Amino Acid Position:
2791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.2
58.6
42.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.7
0.62
0.9
68.5
41.8
Minor 5ss
31.4
-2.1
3.1
38.3
46.6
Minor BPS
58.5
0.35
2
75.27
47.4

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294