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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11344345_11344842_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11344345 - 11344842
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCATCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTCTTCTCAATA
Flanking Amino Acid:
RLAAFTAGCEVFEIILSRGY
Intron Amino Acid Position:
2734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
77
31.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
73
0.52
0.8
70.9
34.9
Minor 5ss
29.3
-2.4
2.9
35.1
41.4
Minor BPS
61.4
0.35
1.5
67.75
39.1

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294