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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11345032_11345350_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11345032 - 11345350
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTGC
5'SS Class:
major
3'SS Sequence:
CCTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTCCTAGTAACA
Flanking Amino Acid:
DYDAAKALFQEILEEYNEVN
Intron Amino Acid Position:
2671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
57.6
42.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
85.7
0.8
0.7
80.5
24.8
Minor 5ss
35.8
-1.6
3.5
50.2
46.4
Minor BPS
47.5
-0.1
2.2
65.34
41.1

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294