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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11345519_11346607_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11345519 - 11346607
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CATTTATTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTTATT
Flanking Amino Acid:
RLVNETDKALVQGHIKKLIE
Intron Amino Acid Position:
2615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.8
0.49
1.1
72.1
36.9
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
62.9
0.49
1.9
83.69
36.7

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294