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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11346702_11347079_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11346702 - 11347079
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
GATATTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGATATTAATG
Flanking Amino Acid:
YNGLTLTTPERFQTVTQMVR
Intron Amino Acid Position:
2583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
66.8
0.38
1.1
59.8
44.7
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
54.5
0
1.7
60.74
41.5

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294