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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11347253_11347955_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11347253 - 11347955
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAATTTCA
5'SS Class:
major
3'SS Sequence:
CTCATGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTGCATCAAAA
Flanking Amino Acid:
YTSILKGHTAMFNESISEIS
Intron Amino Acid Position:
2526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
70.8
35.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.4
0.64
0.9
72
37.8
Minor 5ss
41
-1
2.7
51.6
44.8
Minor BPS
47.8
-0.1
2
63.4
42.1

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294