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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11348928_11349374_R

Intron Information:

Intron Rank:
40
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11348928 - 11349374
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTATTGAGT
5'SS Class:
weak_major
3'SS Sequence:
CAGATGCTGCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CCATTCTTAACC
Flanking Amino Acid:
LSNLNKDLNVLINFSSRTTS
Intron Amino Acid Position:
2391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.6
0.25
1.1
60.9
43.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
51.7
0.04
1.1
43.2
43
Minor 5ss
42.6
-0.8
3.2
61.3
43.6
Minor BPS
72
0.67
1.3
70.36
41.3

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294