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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11350551_11351015_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11350551 - 11351015
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATTT
5'SS Class:
strong_major
3'SS Sequence:
TAATGGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATCTCTTTAATG
Flanking Amino Acid:
NILAKPGELPGQLPTLYDFH
Intron Amino Acid Position:
2301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.6
33.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
73.1
0.52
1
65.7
44.9
Minor 5ss
42.5
-0.8
3.4
64.3
47.2
Minor BPS
72.4
0.56
1.3
69.15
39.1

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294