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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11351233_11351531_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11351233 - 11351531
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTTTTCAACA
Flanking Amino Acid:
TIVPQTDLNMVVQLTVMLEA
Intron Amino Acid Position:
2229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
76.5
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.3
0.7
0.9
77.7
35.5
Minor 5ss
28.6
-2.5
3.2
36.4
42
Minor BPS
67
0.53
1.5
75.9
35.2

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294