About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11351667_11352508_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11351667 - 11352508
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
ATGGAATGAATT
Flanking Amino Acid:
QKWIQKRENEQERMELNRLF
Intron Amino Acid Position:
2184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
80.6
33.8
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
90.7
0.92
0.6
89.3
19.6
Minor 5ss
32.6
-2
3.4
48
47.7
Minor BPS
44.7
-0.3
1.9
61.54
42.2

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294