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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11352632_11352756_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11352632 - 11352756
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTCATTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GTTCATTTTATA
Flanking Amino Acid:
LQSHCALLFEVGDLQYASPA
Intron Amino Acid Position:
2143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.8
38.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.5
0.64
0.9
72.7
37.3
Minor 5ss
30.6
-2.2
3
42
44.7
Minor BPS
48.7
-0.1
1.8
62.36
37.3

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294