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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11353657_11353828_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11353657 - 11353828
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
GTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTCTATTGAATT
Flanking Amino Acid:
EGGYVVLPVQVDKVVQMYET
Intron Amino Acid Position:
2005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
72
32.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
89.4
0.89
0.7
88.9
28.2
Minor 5ss
38.2
-1.3
2.9
48.3
47.4
Minor BPS
54.2
0.21
1.6
70.4
40.8

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294