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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11354021_11354422_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11354021 - 11354422
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGACTTG
5'SS Class:
major
3'SS Sequence:
ATATTTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
TCTGCTATATTT
Flanking Amino Acid:
LKRGSADLSEEVVLMRALRD
Intron Amino Acid Position:
1941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63
44.1
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
74.8
0.56
1
74.2
40.7
Minor 5ss
45.4
-0.5
3.3
63.6
48.1
Minor BPS
47.8
-0
1.9
67.91
43.9

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294