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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11355580_11356161_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11355580 - 11356161
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TATTGCTGAGGT
Flanking Amino Acid:
TNCGEGMDFKAVGKIFSGLA
Intron Amino Acid Position:
1778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
84.6
33.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
79
0.65
0.9
81.2
36.5
Minor 5ss
47
-0.3
2.9
67.1
37.8
Minor BPS
45.8
-0.2
2.3
70.12
46.3

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294