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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11356297_11356583_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11356297 - 11356583
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
CTGTCTTCAAAG
Flanking Amino Acid:
TDRIYLTLTQALSMFLGGAP
Intron Amino Acid Position:
1733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
85.9
29.8
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
69.7
0.44
1
70.3
34.2
Minor 5ss
47.1
-0.3
2.7
68.3
42.6
Minor BPS
51.2
-0.1
1.8
56.49
45.1

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294