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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11356768_11356856_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11356768 - 11356856
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTCC
5'SS Class:
major
3'SS Sequence:
TTCTCTTGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCCTTTTATCT
Flanking Amino Acid:
RDIVDTFVRDSILQAQEFEW
Intron Amino Acid Position:
1671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.1
36.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
79.5
0.66
0.8
76.7
31.9
Minor 5ss
44.5
-0.6
2.9
60
44.7
Minor BPS
55.6
0.26
1.6
70.88
40.5

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294