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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11357127_11357616_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11357127 - 11357616
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAATGA
5'SS Class:
major
3'SS Sequence:
CTATTTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCTAT
U12 Branch Point Sequence:
GACTCCCAAACT
Flanking Amino Acid:
AIFRYCEDRSRVDWMLLYQG
Intron Amino Acid Position:
1581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
0.9
67.2
34.4
Major BPS
66
0.4
1.3
64.8
42.4
Major PPT
78.2
0.63
0.8
72.7
31.9
Minor 5ss
31.2
-2.1
3.1
38.8
46.3
Minor BPS
51.2
0.12
2
70.79
45.5

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294