About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11357841_11358359_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11357841 - 11358359
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
TTGTTGATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GGTTTCTCAAAT
Flanking Amino Acid:
PLCVQEHMIKMYDNIASLRF
Intron Amino Acid Position:
1507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.9
0.69
0.9
78.1
40.1
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
59.6
0.38
1.7
75.27
40.7

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294