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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11358594_11358742_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11358594 - 11358742
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TATTTTCTAGTT
Flanking Amino Acid:
FDSVDRMFKEIIDETVKEPT
Intron Amino Acid Position:
1429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
89.2
28.7
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
75.2
0.57
0.8
70.7
29.2
Minor 5ss
25.7
-2.8
3.6
35.8
41.1
Minor BPS
50.2
0.08
1.8
73.19
38.1

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294