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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11358866_11358966_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11358866 - 11358966
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGACTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGTTTTTGATG
Flanking Amino Acid:
TLSLIGEVIEIWMVVQRKWM
Intron Amino Acid Position:
1388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
70.7
0.47
0.9
67.5
38.7
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
63.1
0.27
1.3
64.84
38.1

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294